CodeEntropy.levels.dihedrals package

Submodules

• CodeEntropy.levels.dihedrals.angle_observations module
  • ConformationChunkTask
    • ConformationChunkTask.chunk_id
    • ConformationChunkTask.frame_indices
    • ConformationChunkTask.frame_selection
    • ConformationChunkTask.group_id
    • ConformationChunkTask.molecule_id
    • ConformationChunkTask.molecule_order
  • DihedralAngleCollector
  • DihedralAngleObservable
    • DihedralAngleObservable.num_residues
    • DihedralAngleObservable.residue_angles
    • DihedralAngleObservable.task
    • DihedralAngleObservable.ua_angles_by_residue
• CodeEntropy.levels.dihedrals.conformational_state_builder module
  • ConformationStateBuilder
    • ConformationStateBuilder.build_conformational_states()
• CodeEntropy.levels.dihedrals.kernels module
  • assign_peak_labels_and_count_flexible()
  • histogram_counts_by_dihedral()
  • wrap_degrees_positive()
• CodeEntropy.levels.dihedrals.peak_detection module
  • ConformationPeakDetector
  • DihedralHistogramData
    • DihedralHistogramData.hist_res
    • DihedralHistogramData.hist_ua
    • DihedralHistogramData.num_dihedrals_res
    • DihedralHistogramData.num_dihedrals_ua
    • DihedralHistogramData.num_residues
  • DihedralPeakData
    • DihedralPeakData.peaks_res
    • DihedralPeakData.peaks_ua
• CodeEntropy.levels.dihedrals.state_assignment module
  • ConformationStateAssigner
  • ConformationStateData
    • ConformationStateData.flex_res
    • ConformationStateData.flexible_ua_updates
    • ConformationStateData.state_res
    • ConformationStateData.states_ua_updates
  • ConformationStatePartial
    • ConformationStatePartial.flex_res
    • ConformationStatePartial.flexible_ua_updates
    • ConformationStatePartial.state_res
    • ConformationStatePartial.states_ua_updates
    • ConformationStatePartial.task
• CodeEntropy.levels.dihedrals.topology module
  • DihedralTopologyDiscovery
  • MoleculeDihedralTopology
    • MoleculeDihedralTopology.group_id
    • MoleculeDihedralTopology.molecule_id
    • MoleculeDihedralTopology.molecule_order
    • MoleculeDihedralTopology.num_residues
    • MoleculeDihedralTopology.residue_dihedrals
    • MoleculeDihedralTopology.ua_dihedrals_by_residue

Module contents