CodeEntropy.levels package

Subpackages

• CodeEntropy.levels.nodes package
  • Submodules
    • CodeEntropy.levels.nodes.accumulators module
      • CovarianceAccumulators
      • GroupIndex
      • InitCovarianceAccumulatorsNode
    • CodeEntropy.levels.nodes.beads module
      • BuildBeadsNode
      • UnitedAtomBead
    • CodeEntropy.levels.nodes.conformations module
      • ComputeConformationalStatesNode
      • ConformationalStateConfig
    • CodeEntropy.levels.nodes.covariance module
      • FrameCovarianceNode
    • CodeEntropy.levels.nodes.detect_levels module
      • DetectLevelsNode
    • CodeEntropy.levels.nodes.detect_molecules module
      • DetectMoleculesNode
    • CodeEntropy.levels.nodes.find_neighbors module
      • ComputeNeighborsNode
      • NeighborConfig

Submodules

• CodeEntropy.levels.axes module
  • AxesCalculator
    • AxesCalculator.find_bonded_atoms()
    • AxesCalculator.get_UA_axes()
    • AxesCalculator.get_UA_masses()
    • AxesCalculator.get_bonded_axes()
    • AxesCalculator.get_custom_axes()
    • AxesCalculator.get_custom_moment_of_inertia()
    • AxesCalculator.get_custom_principal_axes()
    • AxesCalculator.get_flipped_axes()
    • AxesCalculator.get_moment_of_inertia_tensor()
    • AxesCalculator.get_residue_axes()
    • AxesCalculator.get_vanilla_axes()
    • AxesCalculator.get_vector()
• CodeEntropy.levels.dihedrals module
  • ConformationStateBuilder
    • ConformationStateBuilder.build_conformational_states()
• CodeEntropy.levels.forces module
  • ForceTorqueCalculator
    • ForceTorqueCalculator.compute_frame_covariance()
    • ForceTorqueCalculator.get_weighted_forces()
    • ForceTorqueCalculator.get_weighted_torques()
  • TorqueInputs
    • TorqueInputs.axes_manager
    • TorqueInputs.box
    • TorqueInputs.center
    • TorqueInputs.force_partitioning
    • TorqueInputs.moment_of_inertia
    • TorqueInputs.rot_axes
• CodeEntropy.levels.frame_dag module
  • FrameContext
    • FrameContext.data
    • FrameContext.frame_covariance
    • FrameContext.frame_index
    • FrameContext.shared
  • FrameGraph
    • FrameGraph.build()
    • FrameGraph.execute_frame()
• CodeEntropy.levels.hierarchy module
  • HierarchyBuilder
    • HierarchyBuilder.get_beads()
    • HierarchyBuilder.select_levels()
• CodeEntropy.levels.level_dag module
  • LevelDAG
    • LevelDAG.build()
    • LevelDAG.execute()
• CodeEntropy.levels.linalg module
  • MatrixUtils
    • MatrixUtils.create_submatrix()
    • MatrixUtils.filter_zero_rows_columns()
• CodeEntropy.levels.neighbors module
  • Neighbors
    • Neighbors.get_neighbors()
    • Neighbors.get_symmetry()
• CodeEntropy.levels.search module
  • Search
    • Search.get_RAD_neighbors()
    • Search.get_grid_neighbors()